ABOUT THIS RECORDspecies: Arachis ipaensis
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Arachis ipaensis Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATCATCATCATCATCATTT miRNA* ATAAGATGAAGGTGATGATAATG mismatches: 3 bulges: 2 |
pre-miRNA
ATTGAAGAGGAGGAGAACATGAATAAGATGAAGGTGATGATAATGATGATGGATTCATCATCATCACAAAAGAAGTTACCATCATCATCATCAGTGCCTG
CACCATTCCTGACAAAGACATACCAACTAGTTGATGATCCTATGACTGACCACATAGTGTCATGGGGTCATGATGGTCATTCCACATCATCATCATCATC
ATTTGTTGTTTGGAGACCTCCTG
dot-bracket secondary structure
.......((((((.((((((((((..(((((.(((((((((..(((((((((.....))))))))).....(((...(((((((..((((..(((.....
.........................)))...))))(((((((((((............))))))))))).)))))))..)))...))))))))).)))))
))))).))))).....)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTGAAGAGGAGGAGAACATGAATAAGATGAAGGTGATGATAATGATGATGGATTCATCATCATCACAAAAGAAGTTACCATCATCATCATCAGTGCCTG
CACCATTCCTGACAAAGACATACCAACTAGTTGATGATCCTATGACTGACCACATAGTGTCATGGGGTCATGATGGTCATTCCACATCATCATCATCATC
ATTTGTTGTTTGGAGACCTCCTG
dot-bracket secondary structure
.......((((((.((((((((((..(((((.(((((((((..(((((((((.....))))))))).....(((...(((((((..((((..(((.....
.........................)))...))))(((((((((((............))))))))))).)))))))..)))...))))))))).)))))
))))).))))).....)))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q7XHZ0|HFB4B_ORYSJ: 0.00000000003 RFAM mir-598: 0.00005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
