miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001615
species: Nicotiana tabacum
miRNA family: miR3436
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAGAAAAAATCATTGTTGGG

miRNA*
 AGACAATGGTTTCACTCTTG

mismatches: 3
bulges: 1
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pre-miRNA
 GACGTTTGTGTGTACTTCAGAGGAGAAAAAATCATTGTTGGGACCAAAAGCCAGGAAACTGTGGGAGAATTAAAACAAAAGCTCAGTTGTATCCTCAAAA
TAGCACCCCGATATCAAATTATAGTTTTCAGAGGAATTTGGCTAGACAATGGTTTCACTCTTGAAGACTATC

dot-bracket secondary structure
.((......))...(((((..((((...(((((((((((.((.(((((..((.(((((((((((................(((...(((......)))..
.)))..............)))))))))))...))..))))))).)))))))))))..)))))))))......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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