ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIRf599
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGGATTACAGGTGTGAGC miRNA* TCATTTTTGTATTTTTAGTAG mismatches: 2 bulges: 0 |
pre-miRNA
ACCACATGTGGCTCATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGCTGACCAGGCGGGTCTTGAACTCTTGACCTCGTGATCCCCCTGCCTCAG
CCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACTCC
dot-bracket secondary structure
.......(((((((((.((((((.((((((((.....((((.........(((((.((((.(((((.(((..........))).))))).))))..))))
))))).....)))))))).)))))).)))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACCACATGTGGCTCATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGCTGACCAGGCGGGTCTTGAACTCTTGACCTCGTGATCCCCCTGCCTCAG
CCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACTCC
dot-bracket secondary structure
.......(((((((((.((((((.((((((((.....((((.........(((((.((((.(((((.(((..........))).))))).))))..))))
))))).....)))))))).)))))).)))))))))......
SIMILARITIES| miRBase hsa-mir-3929: 0.0000000000005 PMRD ptc-miRf10804-akr: 0.00000000000003 microPC no hits | UniProt sp|Q96N38|ZN714_HUMAN: 0.000000000002 RFAM Metazoa_SRP: 5e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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