ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGATGGAGCATG miRNA* TTCTTTGTTGTTTCCTGTGATT mismatches: 3 bulges: 1 |
pre-miRNA
TATGTTATGAATGACAGAAGAGATGGAGCATGGGAAACTTGACTGTTGATGTACGTTCTACAACATCAAATAATTCCAAAAAAAGTCTCCTATTCTTTGT
TGTTTCCTGTGATTGACCATAG
dot-bracket secondary structure
.....(((((((.(((((((.(((((((.((((((.((((.....(((((((..........))))))).............)))).)))))).))))))
).))).)))).)))...)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
TATGTTATGAATGACAGAAGAGATGGAGCATGGGAAACTTGACTGTTGATGTACGTTCTACAACATCAAATAATTCCAAAAAAAGTCTCCTATTCTTTGT
TGTTTCCTGTGATTGACCATAG
dot-bracket secondary structure
.....(((((((.(((((((.(((((((.((((((.((((.....(((((((..........))))))).............)))).)))))).))))))
).))).)))).)))...)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
