miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST001629
species: Nicotiana tabacum
miRNA family: MIR1530
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGTCACATAAATTAAAATAG

miRNA*
 GTTCTAATTTCTTTGACACTT

mismatches: 5
bulges: 0
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pre-miRNA
 TATACACCTTCTGTTCTAATTTCTTTGACACTTTTTGTTAGTTTGTTCCAAAAAGGACGGACATATTTGATATTTGAGAATACTTTACCTTAACCTTAAT
AGAATTTTTTATGACATCACATATATTATGGAATATATACGACCATAATTTTCAAATATCTTATAGTCGTACAAATATTATAGCATGTTTAATACCACAA
CTTTCAAATTCTTCTTTTCCTTAAAAACAAAATATGTCACATAAATTAAAATAGAGGAAGTAT

dot-bracket secondary structure
.((((..((((((((.((((((...(((((..(((((((.((((((((......)))))))).(((.((((.((.((((((.((................
)).))))))...)).)))).)))..(((.(((((((.((((((.((((............)))).)))))).((((((......)))))).)))......
................)))).))).)))))))..)))))...)))))).))))))))..))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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