miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum



ABOUT THIS RECORD

ID: MNEST001639
species: Nicotiana tabacum
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGAGCTCCTT

miRNA*
 GAGAGCTTCCTTCACCCACTC

mismatches: 2
bulges: 2
View larger
pre-miRNA
 TGTGCATTAAGGAATGGTCTAAGAGAGCTTCCTTCACCCACTCATGGAGGAGAACTGGGGTTGAATTAGCTGCCGCCTCATTCATCCAACCACTCAGTAGA
AAGGAATAGGTTTTGTGCTACTGTGATTGAGTGAATGATGCGGGAGATAGTTTTCTATTCCTCTCTTTCCTTGCTTGGACTGAAGGGAGCTCCTTTTTTC
CATTTTCTTCATT

dot-bracket secondary structure
).........(((((((...(((.((((((((((((.(((..((.((((((((...(((((.((((((.((.((((.((((((((.(((.(((..(((((.
.((((.....))))...)))))))).))).)))))))).)))).)).))))))...)))))))))))))..))..)))..)))))))))))))))....)
)))))).......


SIMILARITIES
miRBase ptc-MIR319f: 1.0E-20

PMRD ptc-miR319f: 1.0E-20

microPC miR319: 5.0E-97		UniProt no hits

RFAM 9MIR159: 2.0E-19		most similar mature miRNAs

Identical with: miR159 from microPC (MNEST045367), miR319 from microPC , miR159 from microPC , miR319 from microPC

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;