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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001640
species: Nicotiana tabacum
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACTTCTCTTGCTGTCACC

mismatches: 0
bulges: 2
View larger
pre-miRNA
 TCAGATGTATGGTAATGTTTGTGGTTGGGAGAGAAGCAAATAAGAGAAGGGGGGACAAGGAGAATCAAGACTGACAGAAGAGAGTGAGCACACGCAGGCA
ATTGTATAAAGATGTATACACACTGTCATTTGCGTGTGCTCACTTCTCTTGCTGTCACCTCTCTCTATATACTTTCCCCCATTTTATTCGGTTTGCTTTG
CTTCCACCACTCAAACCACTTACACTT

dot-bracket secondary structure
.....((((((((..((...(((((.(((((.(((((((((..(((...((((((.(((.(((....(((.(((((((((((((((((((((((((((((
..((((((......))))))...))))...))))))))))))).)))))).))))))..))).))).....)))))))))......))).))))))))).
)))))))))).)).))))..))))...


SIMILARITIES
miRBase tcc-MIR156c: 8e-16

PMRD stu-miR156a: 6e-20

microPC miR156: 6e-20		UniProt no hits

RFAM mir-156: 0.0000000000009		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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