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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000166
species: Avena barbata
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTGGAGGGATTCCTTCCTTG

miRNA*
 AGGTGATGGTCTTTCCTGTT

mismatches: 5
bulges: 1
View larger
pre-miRNA
 GCAAAAATGAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGAATCTTCTGTTTGACGTTATCGATACTATCAGAGGGCTCGACTTCGAGGTGAT
GGTCTTTCCTGTTAAAGTCTTCACGAAAATC

dot-bracket secondary structure
........(((((....(((((..(((((((((....(((((...(((.(((((((.((((.....))))......))))))).)))....)))))....
))))))))).))))).)))))..........


SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.0001

microPC no hits		UniProt sp|P22589|UBIQP_PHYIN: 0.000000000001

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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