ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATCA miRNA* ACGATAGCGATGATGATGACG mismatches: 5 bulges: 0 |
pre-miRNA
CCGCACCCTCGTCATCATCATCATCATCATCATCATCACAAGTACCGCAACGACCAATCGAAACCCTAACATTGAAACTGAAGCCAAAGAAGAGAGTATC
ATGGAAAGCTGGGACAGTGGACAATGAATTCCTCAACAAGAAAAGTTCCAAAAAATGTTGCATTTTCCACAAAGAAAAGCCTTTTGATGAAGACGATAGC
GATGATGATGACGAAGAAAAT
dot-bracket secondary structure
........((((((((((((((...(((.((.((((((.(((....((..(((....)))...(((......(((.(((...............))).))
).........)))...(((((.((((.......(((((.................))))))))).)))))........))))).)))))).)).)))...
)))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCGCACCCTCGTCATCATCATCATCATCATCATCATCACAAGTACCGCAACGACCAATCGAAACCCTAACATTGAAACTGAAGCCAAAGAAGAGAGTATC
ATGGAAAGCTGGGACAGTGGACAATGAATTCCTCAACAAGAAAAGTTCCAAAAAATGTTGCATTTTCCACAAAGAAAAGCCTTTTGATGAAGACGATAGC
GATGATGATGACGAAGAAAAT
dot-bracket secondary structure
........((((((((((((((...(((.((.((((((.(((....((..(((....)))...(((......(((.(((...............))).))
).........)))...(((((.((((.......(((((.................))))))))).)))))........))))).)))))).)).)))...
)))))))))))))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O14218|YPI1_SCHPO: 0.0000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
