miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001672
species: Nicotiana tabacum
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCATCA

miRNA*
 ACGATAGCGATGATGATGACG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 CCGCACCCTCGTCATCATCATCATCATCATCATCATCACAAGTACCGCAACGACCAATCGAAACCCTAACATTGAAACTGAAGCCAAAGAAGAGAGTATC
ATGGAAAGCTGGGACAGTGGACAATGAATTCCTCAACAAGAAAAGTTCCAAAAAATGTTGCATTTTCCACAAAGAAAAGCCTTTTGATGAAGACGATAGC
GATGATGATGACGAAGAAAAT

dot-bracket secondary structure
........((((((((((((((...(((.((.((((((.(((....((..(((....)))...(((......(((.(((...............))).))
).........)))...(((((.((((.......(((((.................))))))))).)))))........))))).)))))).)).)))...
)))))))))))))).......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O14218|YPI1_SCHPO: 0.0000002

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;