ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTACTCCCTCTGTCCCATAAT miRNA* TTCGGGGACGGAGGGAGTATAT mismatches: 3 bulges: 1 |
pre-miRNA
TATATAACATTCTACTCCCTCTGTCCCATAATAAATGTTTCAGATTTGTCAAAATTTGGATGAACCTATATACTAAATAGTGTCTAGATTCATCTAAATT
TTGAAAAATCCAAGACATCTATTTCGGGGACGGAGGGAGTATATTTCTTTCT
dot-bracket secondary structure
............(((((((((((((((..((((.((((((..(((((.((((((((((((((((.(((.(((((....))))).))).))))))))))))
)))).)))))..)))))).))))...)))))))))))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATATAACATTCTACTCCCTCTGTCCCATAATAAATGTTTCAGATTTGTCAAAATTTGGATGAACCTATATACTAAATAGTGTCTAGATTCATCTAAATT
TTGAAAAATCCAAGACATCTATTTCGGGGACGGAGGGAGTATATTTCTTTCT
dot-bracket secondary structure
............(((((((((((((((..((((.((((((..(((((.((((((((((((((((.(((.(((((....))))).))).))))))))))))
)))).)))))..)))))).))))...)))))))))))))))...........
SIMILARITIES| miRBase no hits PMRD asa-miR1122: 0.0000001 microPC no hits | UniProt no hits RFAM MIR1122: 0.000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
