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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000171
species: Avena barbata
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACTCCTCTTTCTGTCAGC

mismatches: 2
bulges: 2
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pre-miRNA
 TGCAATCTGCAAAGTAAGGTCAGCTCCTCCGCGGAGAATCCCTCAAGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGTCCGGCATAACATGTATG
CCGTCTTCGCCGCGTGCTCACTCCTCTTTCTGTCAGCCTCTTTCTCTTGGGAGTTCACCTTACATTCAGATCCACAAGTGGGTTT

dot-bracket secondary structure
((((...))))..(((((((.(((((((....((((((.......((((.((((((((((.((((((((((.(((((.((....(((((((.....))))
)))))..))))).))))))))))...)))))))))).)))))))))).))))))).))))))).....((((((....)))))).


SIMILARITIES
miRBase bdi-MIR156c: 9e-43

PMRD osa-miR156d: 4e-39

microPC miR156: 5e-23		UniProt no hits

RFAM mir-156: 1e-29		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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