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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000171
species: Avena barbata
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACTCCTCTTTCTGTCAGC

mismatches: 2
bulges: 2
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pre-miRNA
 TGCAATCTGCAAAGTAAGGTCAGCTCCTCCGCGGAGAATCCCTCAAGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGTCCGGCATAACATGTATG
CCGTCTTCGCCGCGTGCTCACTCCTCTTTCTGTCAGCCTCTTTCTCTTGGGAGTTCACCTTACATTCAGATCCACAAGTGGGTTT

dot-bracket secondary structure
((((...))))..(((((((.(((((((....((((((.......((((.((((((((((.((((((((((.(((((.((....(((((((.....))))
)))))..))))).))))))))))...)))))))))).)))))))))).))))))).))))))).....((((((....)))))).


SIMILARITIES
miRBase bdi-MIR156c: 9e-43

PMRD osa-miR156d: 4e-39

microPC miR156: 5e-23		UniProt no hits

RFAM mir-156: 1e-29		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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