ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTTGTCCTTGGCTACA mismatches: 1 bulges: 1 |
pre-miRNA
CTCTAATAACTGCCTGGGGGCCATGCAAGAAGGGGTAGAGAGTGGGAGATGCAGCCAAGGATGACTTGCCGGCAGCCACCACACCAGGCGTCAACATACG
CCGGCATAATATGCATGATTATGGCCAAGGATCCCGGCCGGCAAGTTTGTCCTTGGCTACACCTTACTCTCTGCCTATCATGTGTTGCCCTTAATTACCT
GGCTTGAGT
dot-bracket secondary structure
(((........((((((((((.(((((.((..((((((((((((((...((.(((((((((((((((((((((.((((...((...(((((......)))
)).((((...)))).))....))))...((...)).))))))))).)))))))))))).)).)))))))))))))).)).))))).))))))).......
)))..))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCTAATAACTGCCTGGGGGCCATGCAAGAAGGGGTAGAGAGTGGGAGATGCAGCCAAGGATGACTTGCCGGCAGCCACCACACCAGGCGTCAACATACG
CCGGCATAATATGCATGATTATGGCCAAGGATCCCGGCCGGCAAGTTTGTCCTTGGCTACACCTTACTCTCTGCCTATCATGTGTTGCCCTTAATTACCT
GGCTTGAGT
dot-bracket secondary structure
(((........((((((((((.(((((.((..((((((((((((((...((.(((((((((((((((((((((.((((...((...(((((......)))
)).((((...)))).))....))))...((...)).))))))))).)))))))))))).)).)))))))))))))).)).))))).))))))).......
)))..))).
SIMILARITIES| miRBase bdi-MIR169f: 2e-19 PMRD osa-miRf11416-akr: 0.0000000002 microPC miR169: 0.00001 | UniProt no hits RFAM MIR169_2: 0.000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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