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Species belonging to selected taxon:

Panicum virgatum



ABOUT THIS RECORD

ID: MNEST001745
species: Panicum virgatum
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGG

miRNA*
GGCAAGTTTGTCCTTGGCTACA

mismatches: 1
bulges: 1

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pre-miRNA
CTCTAATAACTGCCTGGGGGCCATGCAAGAAGGGGTAGAGAGTGGGAGATGCAGCCAAGGATGACTTGCCGGCAGCCACCACACCAGGCGTCAACATACG
CCGGCATAATATGCATGATTATGGCCAAGGATCCCGGCCGGCAAGTTTGTCCTTGGCTACACCTTACTCTCTGCCTATCATGTGTTGCCCTTAATTACCT
GGCTTGAGT


dot-bracket secondary structure
(((........((((((((((.(((((.((..((((((((((((((...((.(((((((((((((((((((((.((((...((...(((((......)))
)).((((...)))).))....))))...((...)).))))))))).)))))))))))).)).)))))))))))))).)).))))).))))))).......
)))..))).



SIMILARITIES
miRBase bdi-MIR169f: 2e-19

PMRD osa-miRf11416-akr: 0.0000000002

microPC miR169: 0.00001
UniProt no hits

RFAM MIR169_2: 0.000000003
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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