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Species belonging to selected taxon:

Avena barbata, Avena sativa



ABOUT THIS RECORD

ID: MNEST000178
species: Avena barbata
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAGTTGTTGTCTCAAGCTT

miRNA*
 GCTCGAGGCAACAACTGCACA

mismatches: 1
bulges: 0
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pre-miRNA
 CGGCGTGCCAGTTGCTGCAAGTGGAGGCGGCAAGCTCGAGGCAACAACTGCACAATTTGCAAGAATATCCCACTGCAGGCACGATGGCATTACTCCATCT
GCATGGAAGCCCATGAATCCAGCCCCATTGTGCGAATTCTGGCCCGTCAATAGAGGAACACGGGTGTGTGACTAGAGACGTAGAAGTGCAAACTCTGGCC
CGTCAATGGAGGAGCACGGGTTTTCGGGCCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAGAACTAC
ATAATT

dot-bracket secondary structure
....(((..((((.(((((((.((((((((((((((.((((((((((((((((((((((((((((.((((((......(((.(((((.......))))))
)).)))((((((.((..(((....((((((.(((......((((((((..(((....((((....))))..)))..)))).(((.((....)))))))))
))))))))).))).)).))))))((((......)))).))).)))))))))))))))))))))))))))).)))))))))))))).)))).))))))).)
))....


SIMILARITIES
miRBase osa-MIR444c: 3e-31

PMRD pvi-miR444: 9e-29

microPC miR444: 5e-24		UniProt sp|Q6EP49|MAD27_ORYSJ: 0.00001

RFAM MIR444: 2e-27		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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