ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCCGTTCCAAAATGTAGGT miRNA* CTACATTTTGAAAAGAAGGGA mismatches: 4 bulges: 0 |
pre-miRNA
CAACACCATAATATATTACTCCCTCCGTTCCAAAATGTAGGTCGTTTTGGCTGTTTTAGATTCATAGTGTTTGCTATGCACATAGAGATAACATATGTCT
AGATACATAGTAAAATATATGAATCTAGAAATGTCAAAAGGACCTACATTTTGAAAAGAAGGGAGTACTAAAAAGATGACAC
dot-bracket secondary structure
.............((.((((((((...((.(((((((((((((.(((((((..(((((((((((((...(((((((((....((((.(((...))).)))
)....)))))))))...)))))))))))))..))))))).))))))))))))).))...)))))))).))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAACACCATAATATATTACTCCCTCCGTTCCAAAATGTAGGTCGTTTTGGCTGTTTTAGATTCATAGTGTTTGCTATGCACATAGAGATAACATATGTCT
AGATACATAGTAAAATATATGAATCTAGAAATGTCAAAAGGACCTACATTTTGAAAAGAAGGGAGTACTAAAAAGATGACAC
dot-bracket secondary structure
.............((.((((((((...((.(((((((((((((.(((((((..(((((((((((((...(((((((((....((((.(((...))).)))
)....)))))))))...)))))))))))))..))))))).))))))))))))).))...)))))))).))............
SIMILARITIES| miRBase tae-MIR1137: 0.0001 PMRD tae-miR1137: 0.0001 microPC miR1439: 0.0000000006 | UniProt no hits RFAM MIR1122: 0.0000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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