miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000184
species: Avena barbata
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCATCATCATCATCATCGTCA

miRNA*
 ATGATGATGATGGTGATGATG

mismatches: 1
bulges: 0
View larger
pre-miRNA
 ACGATCCACTACTTGTTGCTCCTGTTTTCGGCGGTCACCCTCCATCATCATCATCATCGTCATTCTAGGTGCTTGTTCGACGACTTCCTTGTCTTTGTCG
ATCCCATGAGCCTCATCGCAAATTAGAGTTTGTCGATCATCATCTCCATCTCCATTTCCATCCTCCTCTTCCTCCTCCTCCTCATCATTCTTTTCTTCAT
CACGCGTTAACTTGTTATTCTTTGCCGTGTCTTCAAGAGAACTGACAGCTTCTCGATTAACGCTCCCACTGCTGTTACTGCAGTTGCTCCACGATGCAGA
TGATAATGTTGATATTAATGATGATGATGATGGTGATGATGATGCTGGGAGTAAGAGGCATCAGGCCAGTGGGAGGGAA

dot-bracket secondary structure
....((((((.((((.((((.((.(((((((((.(((.....((((((((((((((((((((((..(((((..((.(((((((.(((..((..((((.((
((............)))))))).))))).))))))).)).)))))..(((..((((.........................(((((.(((((((......
((((((.(((....))).....)).)))).....))))))).(((((((.....((.......)).....))))))).((((............))))))
))).))))..)))...)))))))))))))))))))))).))))))))))))..)).)))).))))..))))))......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-598: 0.0004		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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