miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aquilegia formosa x Aquilegia pubescens, Eschscholzia californica, Papaver somniferum



ABOUT THIS RECORD

ID: MNEST001868
species: Papaver somniferum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Papaver somniferum Papaver Papaveraceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGTATTCCCTCCGTCCCACT

miRNA*
 TGGGGACGGGAGGGAGTACATAC

mismatches: 3
bulges: 2
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pre-miRNA
 TTGATTAATAATAGTATTCCCTCCGTCCCACTCTTAAGTGACCTATTTGAAATTTGCACAATTTTTAAGGCAATCAAAGGAAAATAGTATTTTTAATCAT
TTTTTACAATTATACCCTTATGATAATAACTAGTGAAATTTAAAAATGGGTTTATCTCTCAAAATACTCCACGGATGTCGCAAATTTCATACAATTGAAA
GCATTTTAAACACCTATGTAACGAATATAAACATGCCTATCAAATTATACATATTTCATATATTATTTTATATACTAAAGGATAATTTCGGAATATCTCA
TTGTTTAGTGATTAGGTCACTTATCATTGGACAAATCTAAATCAATAGTCACTTAGAGTGGGGACGGGAGGGAGTACATACAGTAGTAT

dot-bracket secondary structure
.............(((((((((((.(((((((((.(((((((.(((((((((((((((((.((....((........(((.((((..(((((((((((((
(..(((..((((((....))))))..)))..)))))...))))))))).)))).))).........))....)).))).))))))))))((.((((((.(
((((.((.......(((((.....))))))).))).)).)).)))).)).(((((((....((((((((.((...)).))))))))...)))))))....
((((((((((((.((....)).)))))))))))).........))))))))))))))))))))...))))))))))).(((....))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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