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Species belonging to selected taxon:
Aquilegia formosa x Aquilegia pubescens
,
Eschscholzia californica
,
Papaver somniferum
ABOUT THIS RECORD
ID:
MNEST001869
species:
Papaver somniferum
miRNA family:
MIR1122
source:
miRNEST
Taxonomy by NCBI:
Papaver somniferum
Papaver
Papaveraceae
Ranunculales
stem eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCCCAAATTA
miRNA*
ATTAGGGACGGAGGGAGTAGT
mismatches:
1
bulges:
0
View larger
pre-miRNA
CCTCGAACAG
TACTCCCTCCGTCCCAAATTA
GATGAGCTAGTTGTAGTTTGCACAATTATTAAGGTAAGGAGGAAAGGGGAGTATGTTTAAGTATTTTTT
TATAATTATATCCTTATAGATAATAACTAGTAAAATTTAAAAATGATTTATCTCTTAAACTATACCATGGTTTTTCGTAAATTTTATACTGTTAAAAAGC
ATTTTAAAACACCTACATAACGAATATAAACATGGCTATCAAATTATACATATTTCTTATAGTAACAATAATCAATTAAAAGGGTAGTTTTAGAAATATC
CCCTTGATTAGAGAGATAGCTCATCTATTTTGGAACAAAATTTAAAACCAAACTAGCTCATCTA
ATTAGGGACGGAGGGAGTAGT
ACTTAGT
dot-bracket secondary structure
..........
(((((((((((((((.(((((
((((((((((((...((((..((..((((((..(((((((.((.((((((((((......)))))))))
)....))...)))))))...))))))...)).((((((.....(((.(((((((((..(((((((((((.((.(((((.............((((((...
.))))))............)))))...)).)))))......................)))))).....(((((((......(((..((((...))))..)
)).)))))))))))))))).)))(((.....)))...)))))).))))..))))))))))))))
))).)))))))))))))))..
.......
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf11019-akr
:
0.0003
microPC
no hits
UniProt
no hits
RFAM
MIR1122: 0.0004
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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