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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST001890
species: Paullinia cupana var. sorbilis
miRNA family: MIR164
source: miRNEST

Taxonomy by NCBI:
Paullinia cupana var. sorbilis Paullinia cupana Paullinia Sapindaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAAGCAGGGCACGTGCA

miRNA*
 CATGTGCCCCTCTTCCCCATC

mismatches: 5
bulges: 0
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pre-miRNA
 GTGTGTAGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCACCAACCATAAAAAACACTGACACATAAATTCAATTGATTGAGTTAGTTCTTCA
TGTGCCCCTCTTCCCCATCATGAACCACTCC

dot-bracket secondary structure
(((.((....((.(((((.((((..(((((((((....(((((((((.(((.............................)))..)))))))))....))
)))))))..)))).))))).)).)))))...


SIMILARITIES
miRBase ctr-MIR164: 3e-20

PMRD ptc-miRf11320-akr: 5e-16

microPC miR164: 5e-53		UniProt no hits

RFAM MIR164: 5e-16		most similar mature miRNAs

Identical with: miR164 from microPC (MNEST046528)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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