ABOUT THIS RECORDspecies: Phaseolus acutifolius
miRNA family: MIR171_1
source: miRNEST
Taxonomy by NCBI:
Phaseolus acutifolius Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGCGTCAATATCTCC miRNA* AGGTATTGGCGTGCCTCAACC mismatches: 1 bulges: 0 |
pre-miRNA
ATGATGAAGAAGATCGAATAGGAGGTATTGGCGTGCCTCAACCTGAAAACATGGTTATATGTTTTCACAACCATGCTTTTGGATTGAGCCGCGTCAATAT
CTCCTTCGATGACAAAACACAGG
dot-bracket secondary structure
............(((((..((((((((((((((((.(((((.((((((.(((((((............))))))).)))))).))))).)))))))))))
)))))))))).............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGATGAAGAAGATCGAATAGGAGGTATTGGCGTGCCTCAACCTGAAAACATGGTTATATGTTTTCACAACCATGCTTTTGGATTGAGCCGCGTCAATAT
CTCCTTCGATGACAAAACACAGG
dot-bracket secondary structure
............(((((..((((((((((((((((.(((((.((((((.(((((((............))))))).)))))).))))).)))))))))))
)))))))))).............
SIMILARITIES| miRBase sbi-MIR171h: 0.0000004 PMRD vvi-miR171b: 0.0000004 microPC miR171: 0.000002 | UniProt no hits RFAM MIR171_1: 0.000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
