miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST001922
species: Phaseolus coccineus
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Phaseolus coccineus Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTT

miRNA*
 GATCATGTGGCAGTTTCACC

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TAATTATCTAACATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGGTTGAGGAGAGATCAGATCATGTGGCAGTTTCA
CCTAGTTGTTGGCCGCATGAACCCTAGTTC

dot-bracket secondary structure
.............((((((.((((.((.((.(((((((((((.((((((((...(((.(((((......))))).)))...)))))))))))))))))))
.)).)).).)))..))))))..........


SIMILARITIES
miRBase gma-MIR167f: 1e-37

PMRD pco-miR167: 2e-33

microPC miR167: 2e-33		UniProt no hits

RFAM MIR167_1: 6e-28		most similar mature miRNAs

Identical with: pco-miR167 from PMRD (MNEST051324)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;