miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Phaseolus coccineus



ABOUT THIS RECORD

ID: MNEST001922
species: Phaseolus coccineus
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Phaseolus coccineus Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTT

miRNA*
 GATCATGTGGCAGTTTCACC

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TAATTATCTAACATCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGGTTGAGGAGAGATCAGATCATGTGGCAGTTTCA
CCTAGTTGTTGGCCGCATGAACCCTAGTTC

dot-bracket secondary structure
.............((((((.((((.((.((.(((((((((((.((((((((...(((.(((((......))))).)))...)))))))))))))))))))
.)).)).).)))..))))))..........


SIMILARITIES
miRBase gma-MIR167f: 1e-37

PMRD pco-miR167: 2e-33

microPC miR167: 2e-33		UniProt no hits

RFAM MIR167_1: 6e-28		most similar mature miRNAs

Identical with: pco-miR167 from PMRD (MNEST051324)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;