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Species belonging to selected taxon:
Picea abies
,
Picea engelmannii x Picea glauca
,
Picea glauca
,
Picea sitchensis
,
Pinus banksiana
,
Pinus contorta
,
Pinus pinaster
,
Pinus taeda
,
Pseudotsuga menziesii var. menziesii
ABOUT THIS RECORD
ID:
MNEST001930
species:
Picea engelmannii x Picea glauca
miRNA family:
MIRf240
source:
miRNEST
Taxonomy by NCBI:
Picea engelmannii x Picea glauca
Picea
Pinaceae
Coniferales
Coniferopsida
Coniferophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGTTCAAGAAAGCCGTGGAAA
miRNA*
CCCACGGCTTTCTTGAGCTTC
mismatches:
1
bulges:
0
View larger
pre-miRNA
CTTTAATAATTT
CCCACGGCTTTCTTGAGCTTC
TTATGCGGATCTGTTGGCGGTGAGATTGACCGCCAACACTGCCGATCGGGA
AGTTCAAGAAAGCCGT
GGAAA
AATATGACA
dot-bracket secondary structure
.....(((.(((
.((((((((((((((((((((
((...(((...((((((((((.......))))))))))...)))...))))
))))))))))))))))
)).))
).)))....
SIMILARITIES
miRBase
pab-MIR396c
:
5e-34
PMRD
ptc-miRf10517-akr
:
0.000006
microPC
miR396
:
1e-28
UniProt
no hits
RFAM
MIR396: 0.000002
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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