ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCTCCTCCG miRNA* GAGGAGGAGAAGAAGAAAGG mismatches: 4 bulges: 1 |
pre-miRNA
CCAACAAAGAAGGAGGAGGAGAAGAAGAAAGGATTTTGAGCTACAATGACAAAATGGGTATTCAAAACCAACAGCTTATTCAGACAGACCAGAGATCCAG
AAATGGAGGCGCCCTTTATGGTCATCTCGAAAATCCCACCAAAGCCCCTCCTCTTCCTCTTCCTCCTCCGCTTCCTCCA
dot-bracket secondary structure
......(((..(((((((((((.(((((.(((.(((((((.(((.((......))..))))))))))......((((.((((((..((((((((.((((.
...))))......)))..))))).))).)))..........)))).)))..))))).)).))))))))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCAACAAAGAAGGAGGAGGAGAAGAAGAAAGGATTTTGAGCTACAATGACAAAATGGGTATTCAAAACCAACAGCTTATTCAGACAGACCAGAGATCCAG
AAATGGAGGCGCCCTTTATGGTCATCTCGAAAATCCCACCAAAGCCCCTCCTCTTCCTCTTCCTCCTCCGCTTCCTCCA
dot-bracket secondary structure
......(((..(((((((((((.(((((.(((.(((((((.(((.((......))..))))))))))......((((.((((((..((((((((.((((.
...))))......)))..))))).))).)))..........)))).)))..))))).)).))))))))).)))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.0007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
