ABOUT THIS RECORDspecies: Picea glauca
miRNA family: miR3633b
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTCCCATCCCATCCATTCTT miRNA* GGGGGATGGTCAGGGAAAGG mismatches: 5 bulges: 1 |
pre-miRNA
GCAGCCCATGAAGGGGGATGGTCAGGGAAAGGCCTTTGCTGTTTACAAGCAAACTGACATAAATACAGTTTATGATGAAAATCTGATCAGGCATAAATGT
TTATGTGAAAGGAATAATCAAGGGTTCCAGCTCCTTCCCATCCCATCCATTCTTCCCAAAAAT
dot-bracket secondary structure
.........(((((.((((((...(((((.(((.((((((.......))))))...((((((((...(((((((.(((........)))..)))))))))
))))))....(((((........))))).)))..)))))...))))))..)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCAGCCCATGAAGGGGGATGGTCAGGGAAAGGCCTTTGCTGTTTACAAGCAAACTGACATAAATACAGTTTATGATGAAAATCTGATCAGGCATAAATGT
TTATGTGAAAGGAATAATCAAGGGTTCCAGCTCCTTCCCATCCCATCCATTCTTCCCAAAAAT
dot-bracket secondary structure
.........(((((.((((((...(((((.(((.((((((.......))))))...((((((((...(((((((.(((........)))..)))))))))
))))))....(((((........))))).)))..)))))...))))))..)))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9SAG8|DNAJ8_ARATH: 0.000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
