miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001953
species: Picea glauca
miRNA family: MIR1448
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTTCCAACGCCTCCCATGCC

miRNA*
 CTTTGGAGGATTTGGAAAGGC

mismatches: 5
bulges: 0
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pre-miRNA
 TCGCGGGGTTTCACAGGGACGCTGTGCACTTTGGTCTTTAGGCTTTGGAGGATTTGGAAAGGCATAGTCATTATTTTTACCGAGGATCATCGATTTTCTC
TGATCCTTTCCAACGCCTCCCATGCCTATAGTCCTCATTGCACATCCCTGTTATTCCCACCCGCT

dot-bracket secondary structure
..(((((.....(((((((...((((((....((.((.(((((...(((((..(((((((((..(((..............(((((((...))))))).)
))..)))))))))..)))))...))))).)).))....)))))))))))))........))))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR1448: 5e-38		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR1448 from microPC (MNEST044991)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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