miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001958
species: Picea glauca
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCTATTCCTCCCATT

miRNA*
 TGGGAGGATAGGAGAAGGCT

mismatches: 1
bulges: 2
View larger
pre-miRNA
 ATGTGGATGGAAGTCTTGAGGATTGGGAGGATAGGAGAAGGCTGTTTGCTTAATTCTCAGTTGAAACCTGATTAGTCTTCCCTATTCCTCCCATTCCTAT
TGCCTCCATCACACA

dot-bracket secondary structure
.((((((((((.((....((((.((((((((((((.((((((((.(((.(((((.....)))))....))).)))))))))))).)))))))).))))..
.)).)))))).))))


SIMILARITIES
miRBase pab-MIR482b: 7e-61

PMRD pta-miR482c: 0.0000004

microPC miR482: 0.0003		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: pab-MIR482b from miRBase (MNEST039384)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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