ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCCAGC miRNA* TGGCAGGTATCCTTGGCTAC mismatches: 0 bulges: 1 |
pre-miRNA
CAGATGAGAAATCATGTGGGATCTTGCATGGAGGGCGGCAGCGAGTGATGGAGCCAAGGATGACTTGCCAGCATCGCAGGAATCTGAAGGGGTTTTGTAC
GACGTCATCATATGCAGGGGAGAGTTGGCAGGTATCCTTGGCTACATATCTCGGAGTGCTTCTCATGCCAGACCTCAGATGAGATTATATATA
dot-bracket secondary structure
...((((....((((.((((.(((.((((((.(((((....((((..(((.((((((((((.((((((((((.((.......((((....(((..(((..
.)))..))).....))))...)))))))))))))))))))))).)))..))))...))))).)))))).))).)))).))))..)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CAGATGAGAAATCATGTGGGATCTTGCATGGAGGGCGGCAGCGAGTGATGGAGCCAAGGATGACTTGCCAGCATCGCAGGAATCTGAAGGGGTTTTGTAC
GACGTCATCATATGCAGGGGAGAGTTGGCAGGTATCCTTGGCTACATATCTCGGAGTGCTTCTCATGCCAGACCTCAGATGAGATTATATATA
dot-bracket secondary structure
...((((....((((.((((.(((.((((((.(((((....((((..(((.((((((((((.((((((((((.((.......((((....(((..(((..
.)))..))).....))))...)))))))))))))))))))))).)))..))))...))))).)))))).))).)))).))))..)))).....
SIMILARITIES| miRBase gma-MIR169a: 0.00001 PMRD gma-miR169a: 0.00001 microPC miR169: 2e-31 | UniProt no hits RFAM MIR169_2: 0.0007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
