miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001963
species: Picea glauca
miRNA family: miR396b
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTCAAGAAAGCTGTGGGAAA

miRNA*
 TTCCACAGCTTTCTTGAACTA

mismatches: 3
bulges: 0
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pre-miRNA
 CGGCGATGAATCCCGCCATGCTCTTCCACAGCTTTCTTGAACTAAGAGTCGATCGGATCCGGTCAGTTCAGAGCTCAAGAAAGCTGTGGGAAAACATGGG
CGGATTCGATGAT

dot-bracket secondary structure
...((.(((((((..(((((...(((((((((((((((((.((..((((.(((((....))))).))))..)).)))))))))))))))))...))))).
.))))))).))..


SIMILARITIES
miRBase pab-MIR396a: 6e-52

PMRD ath-miR396b: 0.00000002

microPC miR396: 8e-33		UniProt no hits

RFAM MIR396: 0.0000001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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