ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACGGCTTTCTTGAACTT miRNA* GATCAAGAAAGCCGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
CCGTCATAGTTTTCCACGGCTTTCTTGAACTTACTTCACGATCAGGTCTGTTGGCGGCCGATCGCATCGATAACAGATCCGGGTGACAAGATCAAGAAAG
CCGTGGGAAATTATAGAG
dot-bracket secondary structure
...(((((((((((((((((((((((((.(((...((((..((.(((((((((...((.....)).....))))))))).)))))).))).)))))))))
)))))))))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGTCATAGTTTTCCACGGCTTTCTTGAACTTACTTCACGATCAGGTCTGTTGGCGGCCGATCGCATCGATAACAGATCCGGGTGACAAGATCAAGAAAG
CCGTGGGAAATTATAGAG
dot-bracket secondary structure
...(((((((((((((((((((((((((.(((...((((..((.(((((((((...((.....)).....))))))))).)))))).))).)))))))))
)))))))))))))).)).
SIMILARITIES| miRBase pab-MIR396b: 7e-61 PMRD ptc-miRf10517-akr: 0.000006 microPC miR396: 4e-50 | UniProt no hits RFAM MIR396: 0.0001 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST045080) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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