ABOUT THIS RECORDspecies: Avena sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena sativa Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCAGTCCCAAAATA miRNA* TTTTGGAAAGGAGCGAGTAAC mismatches: 5 bulges: 0 |
pre-miRNA
CCTTCTATAATTACTCCCTCAGTCCCAAAATAAGTGATATGGATTTGTCTAGATTCGGATGTATCTAGCCGGATTTTAGTATATAGATACATATGAATGT
AGACTAACCCAAGTCATTTATTTTGGAAAGGAGCGAGTAACTAATTTGA
dot-bracket secondary structure
.......((.((((((.(((....((((((((((((((.(((.((.(((((.(((((.(((((((((.....((....))...))))))))).))))).)
)))).)).))).))))))))))))))....))).)))))).))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTTCTATAATTACTCCCTCAGTCCCAAAATAAGTGATATGGATTTGTCTAGATTCGGATGTATCTAGCCGGATTTTAGTATATAGATACATATGAATGT
AGACTAACCCAAGTCATTTATTTTGGAAAGGAGCGAGTAACTAATTTGA
dot-bracket secondary structure
.......((.((((((.(((....((((((((((((((.(((.((.(((((.(((((.(((((((((.....((....))...))))))))).))))).)
)))).)).))).))))))))))))))....))).)))))).))......
SIMILARITIES| miRBase far-MIR1122: 0.0005 PMRD osa-miRf11619-akr: 0.00003 microPC miR1439: 0.00003 | UniProt no hits RFAM MIR1122: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
