miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001980
species: Picea glauca
miRNA family: miR946a
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGGATATAGAAGGGTTAGT

miRNA*
CAGCCCTTCTGCTATCCACAAC

mismatches: 1
bulges: 1

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pre-miRNA
GGAGCTGTTTTCTTGCAGTATGAAGAAATTGATGCGTTCAGAGTGTACAGATGTGGATATAGAAGGGTTAGTTAGTAAACAGTACGAAGCCCATCTAATA
GAGATTCCATGAGAGGCATTTTATTGCAAGATGTTGGCTGTTCGAGATCAAGCGACTGTGTTCGAGCAGTGCATTTTAATGGCAATACTCATTAAATGGG
TTGCCTGTTTTTTCTTTACCAGCCCTTCTGCTATCCACAACAGTACTAGTTTGCTCACATCAATTTCTTCGACGGCAATAAAAAATTAT


dot-bracket secondary structure
.......((((.((((.((..(((((((((((((....((((..((((...((((((((((((((((((.((.((.((((((.....(((((((.((((.
((((((((((.(((((((((((.....)))))))).((((((((((..((......))..))))))))))....))).)))).))).))))))).)))))
))..))))))...))..)).)))))))))).))))))))...))))...))))....))))))))))))).)).)))).))))......



SIMILARITIES
miRBase pta-MIR946a: 2e-17

PMRD pta-miR946a: 2e-17

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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