miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001987
species: Picea sitchensis
miRNA family: miR3948
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGAGTGGGAGTGGGAGTGGG

miRNA*
 TGCTCCGATTGCCGCTAATGA

mismatches: 5
bulges: 0
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pre-miRNA
 GAAGAAACCTTGGGAGTGGGAGTGGGAGTGGGAGCCGGAGCGAAGGAAGGAGAACGGGCAACGATCGAGGGCCCCGGAGAGGCTGGTGTCGGTGCGGGGG
CGCCGTGACTACGGTTTCGCAGAGACAGAACCACGATAATAACCTTCTCTCCCTTCTGGCAGTTGCTCCGATTGCCGCTAATGAAGTGAAAG

dot-bracket secondary structure
......((.(((..(((((.(((.(((((((..(((((((....(((..(((((.((......((((.((...((((.....))))((((..((((((..
.(((((....)))))))))))..))))...)).)))).....)))))))))).)))))))..))))))).))).)))))..))).)).....


SIMILARITIES
miRBase cre-MIR1171: 0.0006

PMRD cre-miR1171: 0.0006

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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