ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: miR3948
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGAGTGGGAGTGGGAGTGGG miRNA* TGCTCCGATTGCCGCTAATGA mismatches: 5 bulges: 0 |
pre-miRNA
GAAGAAACCTTGGGAGTGGGAGTGGGAGTGGGAGCCGGAGCGAAGGAAGGAGAACGGGCAACGATCGAGGGCCCCGGAGAGGCTGGTGTCGGTGCGGGGG
CGCCGTGACTACGGTTTCGCAGAGACAGAACCACGATAATAACCTTCTCTCCCTTCTGGCAGTTGCTCCGATTGCCGCTAATGAAGTGAAAG
dot-bracket secondary structure
......((.(((..(((((.(((.(((((((..(((((((....(((..(((((.((......((((.((...((((.....))))((((..((((((..
.(((((....)))))))))))..))))...)).)))).....)))))))))).)))))))..))))))).))).)))))..))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAAGAAACCTTGGGAGTGGGAGTGGGAGTGGGAGCCGGAGCGAAGGAAGGAGAACGGGCAACGATCGAGGGCCCCGGAGAGGCTGGTGTCGGTGCGGGGG
CGCCGTGACTACGGTTTCGCAGAGACAGAACCACGATAATAACCTTCTCTCCCTTCTGGCAGTTGCTCCGATTGCCGCTAATGAAGTGAAAG
dot-bracket secondary structure
......((.(((..(((((.(((.(((((((..(((((((....(((..(((((.((......((((.((...((((.....))))((((..((((((..
.(((((....)))))))))))..))))...)).)))).....)))))))))).)))))))..))))))).))).)))))..))).)).....
SIMILARITIES| miRBase cre-MIR1171: 0.0006 PMRD cre-miR1171: 0.0006 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
