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Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis



ABOUT THIS RECORD

ID: MNEST001999
species: Picea sitchensis
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCAGCCAAGGATGACTTGCCT

miRNA*
 GTAAGTTGTCCTCGGCTAAAT

mismatches: 2
bulges: 0
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pre-miRNA
 GTTCATCTGTGCGCTTGCATGTAGAGGCAGAACTATTTATTCAGCCAAGGATGACTTGCCTACACCTTGTTATAGGTATCTGCTAGTTATGCCGATATTG
ATTTCAGGTACCGGGTAAGTTGTCCTCGGCTAAATATTTGTCTCTGTATCTTATGCCAGACCTCAGATGAGG

dot-bracket secondary structure
.((((((((....((.(((((.(((.(((((..((..((((.((((.((((((((((((((..((((.(..((.((((((.((.......)).)))))).
))..)))))...)))))))))))))).)))).))))..))..))))).)))))))).))....)))))))).


SIMILARITIES
miRBase sbi-MIR169c: 0.000009

PMRD sbi-miR169c: 0.000009

microPC miR169: 4e-45		UniProt no hits

RFAM MIR169_5: 0.0002		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST045441)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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