ABOUT THIS RECORDspecies: Picea sitchensis
miRNA family: MIR535
source: miRNEST
Taxonomy by NCBI:
Picea sitchensis Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAACGAGAGAGAGCACGC miRNA* GTGCTCTCTGCTTGTAGTCAGC mismatches: 1 bulges: 1 |
pre-miRNA
TATTCCATTGCTGACAACGAGAGAGAGCACGCCTGTATTCTCTTATATGAATTTTGCATATGTGGGCGTCCATGCGTGCTCTCTGCTTGTAGTCAGCAAA
GCGAC
dot-bracket secondary structure
.......((((((((.((((((((((((((((.((.((.(((.((((((.......)))))).))).)).)).))))))))))).))))).)))))))).
.....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTCCATTGCTGACAACGAGAGAGAGCACGCCTGTATTCTCTTATATGAATTTTGCATATGTGGGCGTCCATGCGTGCTCTCTGCTTGTAGTCAGCAAA
GCGAC
dot-bracket secondary structure
.......((((((((.((((((((((((((((.((.((.(((.((((((.......)))))).))).)).)).))))))))))).))))).)))))))).
.....
SIMILARITIES| miRBase pab-MIR535: 6e-55 PMRD vvi-miR535c: 0.00002 microPC miR535: 2e-42 | UniProt no hits RFAM MIR535: 0.0004 | most similar mature miRNAs |
Identical with: pab-MIR535 from miRBase (MNEST039387) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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