miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002023
species: Pinus banksiana
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCATCATCATCATCTTGT

miRNA*
 AAGATGATATCATGATGAACATA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 AAGGCTGGCAAGATGATATCATGATGAACATACATATTGGAACCACCCTCTTCAGTTTCTTCTTCATATATCCAGACCTCAAGATGGCTAACATCGTCTT
CATTACGAGCTGATAAAATAATCAAGTCAAAAGGTTTAATTGTCATGTCTTCGATTTCATCTTCATCATCATCATCTTGTTCTACA

dot-bracket secondary structure
......(((((((((((...((((((((((((((.....(((((....((((.((..(((.............))).)).))))(((((....((((...
....))))..((((......)))))))))...)))))...))).))))..............))))))).))))))))))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q9P775|YBEG_SCHPO: 0.0000004

RFAM mir-598: 0.0007		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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