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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002026
species: Pinus contorta
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Pinus contorta Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCTATTCCTCCCATT

miRNA*
 TGGGAGGGTAGGAGAAGGCT

mismatches: 0
bulges: 2
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pre-miRNA
 GGGGATCTGTCATGTGGATGGAAGTCTTGAGGAGTGGGAGGGTAGGAGAAGGCTCTGTGGTGAGGTCTCAGTCATAATCTCATCAGTCTTCCCTATTCCTC
CCATTCCTATTGCCTCCCTTCACAATGTAACACAG

dot-bracket secondary structure
).((.....)).((((((.(((.((....(((((((((((((((((.((((((....(((((((((..........))))))))))))))))))).)))))
))))))))...)).))).)))))).(((...))).


SIMILARITIES
miRBase pta-MIR482c: 6.0E-40

PMRD pta-miR482c: 6.0E-40

microPC miR482: 1.0E-7		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: pta-miR482c from PMRD (MNEST051569), pta-MIR482c from miRBase

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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