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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002027
species: Pinus contorta
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Pinus contorta Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTT

miRNA*
 GTTCAAGAAAACTGTGGGAAA

mismatches: 1
bulges: 0
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pre-miRNA
 ACTCATGACGAATCTTGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGA
AAACTGTGGGAAAGCATGGTAGGATTCTGCAATA

dot-bracket secondary structure
)....((..((((((((((((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..))))))))))))
)).))))))))))).))))))))))))..))...


SIMILARITIES
miRBase pta-MIR396: 3.0E-63

PMRD pta-miR396: 3.0E-63

microPC miR396: 4.0E-44		UniProt no hits

RFAM 6MIR396: 5.0E-53		most similar mature miRNAs

Identical with: pta-MIR396 from miRBase (MNEST039426), miR396 from microPC , pta-miR396 from PMRD , miR396 from microPC

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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