miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002037
species: Pinus taeda
miRNA family: MIRf837
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAGGCATTGACTGGTGATGA

miRNA*
 ATCACTCACGTCCTTGCATTCTT

mismatches: 4
bulges: 2
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pre-miRNA
 ACCCAGCATTGGGAGGCATTGACTGGTGATGAGAAGCACTTTATCACTCACGTCCTTGCATTCTTTGCTGCCT

dot-bracket secondary structure
...(((((..((((.(((..(((.(((((((((......)))))))))...)))..))).)))).)))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P49730|RIR2_TOBAC: 0.0001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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