ABOUT THIS RECORDspecies: Barnadesia spinosa
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Barnadesia spinosa Barnadesia Barnadesioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCGTCACCATCATCATCA miRNA* GTGGTCATGGCTGCCATGTGA mismatches: 5 bulges: 0 |
pre-miRNA
ATTGCCCCCATGGTGGTCATGGCTGCCATGTGATCATCGTCACCATCATCATCATATCCTATT
dot-bracket secondary structure
.........((((((((.((((..((.(((....))).))..)))).))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATTGCCCCCATGGTGGTCATGGCTGCCATGTGATCATCGTCACCATCATCATCATATCCTATT
dot-bracket secondary structure
.........((((((((.((((..((.(((....))).))..)))).))))))))........
SIMILARITIES| miRBase ath-MIR414: 0.0007 PMRD ath-miR414: 0.0007 microPC no hits | UniProt no hits RFAM mir-598: 0.00005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
