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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002040
species: Pinus taeda
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGTGTTCCCAGGTCGCCCCGG

miRNA*
 GGGGTGACCTTGGAACACATT

mismatches: 2
bulges: 0
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pre-miRNA
 ATGAAAGAGAGTAGGCTCGACTGGGGTGACCTTGGAACACATTCACATTCACAGGACTCATGGAGAAATCAAGAGATTACATTAATGTNNACGTGTTCCC
AGGTCGCCCCGGTGGAAACCTCCTCTGCTAC

dot-bracket secondary structure
.......((((.(((.((.(((((((((((((.(((((((....(((((.....(((((...((....))..))).)).....)))))....))))))).
))))))))))))).))..))).)))).....


SIMILARITIES
miRBase pta-MIR398: 1e-62

PMRD pta-miR398: 1e-62

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record




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