ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTGTTCCCAGGTCGCCCCGG miRNA* GGGGTGACCTTGGAACACATT mismatches: 2 bulges: 0 |
pre-miRNA
ATGAAAGAGAGTAGGCTCGACTGGGGTGACCTTGGAACACATTCACATTCACAGGACTCATGGAGAAATCAAGAGATTACATTAATGTNNACGTGTTCCC
AGGTCGCCCCGGTGGAAACCTCCTCTGCTAC
dot-bracket secondary structure
.......((((.(((.((.(((((((((((((.(((((((....(((((.....(((((...((....))..))).)).....)))))....))))))).
))))))))))))).))..))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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ATGAAAGAGAGTAGGCTCGACTGGGGTGACCTTGGAACACATTCACATTCACAGGACTCATGGAGAAATCAAGAGATTACATTAATGTNNACGTGTTCCC
AGGTCGCCCCGGTGGAAACCTCCTCTGCTAC
dot-bracket secondary structure
.......((((.(((.((.(((((((((((((.(((((((....(((((.....(((((...((....))..))).)).....)))))....))))))).
))))))))))))).))..))).)))).....
SIMILARITIES| miRBase pta-MIR398: 1e-62 PMRD pta-miR398: 1e-62 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
