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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002043
species: Pinus taeda
miRNA family: MIR1313
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACCACTGAAATTATTGTTCG

miRNA*
 AACAATAATTTCAGTGGAAGA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CTCCTCTTCCCGGTGGTATTCTACCACTGAAATTATTGTTCGAAATAACACCTGCAATTCATGGATGTATACTGCCGTGGTATCGCCAGTCTAACCTAGT
TGCAGGGTTGCAACACATGGCATGGTGGGGGATCTATTGGGCAATAACCAAGTTGCATGGGTGTATTTATCCAACAATAATTTCAGTGGAAGACTTCCAT
CGATCTGGAAG

dot-bracket secondary structure
.....(((((((((((...(((.(((((((((((((((((.((((..((((((((((((..(((...(((..((((((((..(((((((((.......((
((((....))))))....))).)))))).....))))..))))))).)))))))))..))))))..)).)).))))))))))))))))).)))...))))
))....)))))


SIMILARITIES
miRBase pta-MIR1313: 7e-78

PMRD pta-miR1313: 7e-78

microPC miR1313: 2e-93		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR1313 from microPC (MNEST046030)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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