ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIRf142
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGCGCTATCCATCCTGGG miRNA* CAGAGGGATAGCGCCCACTG mismatches: 5 bulges: 1 |
pre-miRNA
TTGATGGAATTACAAAGCTCAGAGGGATAGCGCCCACTGCAAATTTCAAGTGGGGCTGGCGCTATCCATCCTGGGCTTCATAATTTCTTT
dot-bracket secondary structure
)....(((((((..((((((((..((((((((((..((((.........))))....))))))))))...))))))))..)))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGATGGAATTACAAAGCTCAGAGGGATAGCGCCCACTGCAAATTTCAAGTGGGGCTGGCGCTATCCATCCTGGGCTTCATAATTTCTTT
dot-bracket secondary structure
)....(((((((..((((((((..((((((((((..((((.........))))....))))))))))...))))))))..)))))))...
SIMILARITIES| miRBase pta-MIR390: 6.0E-39 PMRD pta-miR390: 6.0E-39 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pta-MIR390 from miRBase (MNEST039425), pta-miR390 from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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