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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002046
species: Pinus taeda
miRNA family: MIRf142
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTGGCGCTATCCATCCTGGG

miRNA*
 CAGAGGGATAGCGCCCACTG

mismatches: 5
bulges: 1
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pre-miRNA
 TGATGGAATTACAAAGCTCAGAGGGATAGCGCCCACTGCAAATTTCAAGTGGGGCTGGCGCTATCCATCCTGGGCTTCATAATTTCTTT

dot-bracket secondary structure
....(((((((..((((((((..((((((((((..((((.........))))....))))))))))...))))))))..)))))))...


SIMILARITIES
miRBase pta-MIR390: 6e-39

PMRD pta-miR390: 6e-39

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: pta-MIR390 from miRBase (MNEST039425)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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