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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002047
species: Pinus taeda
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 ACTGCAGCCTGGCACGAGA

mismatches: 4
bulges: 0
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pre-miRNA
 TCGGATCAACGAGCAGAAGACATGGCAGAGTTGGGGTGAGGGGACTGCAGCCTGGCACGAGACCTGAAAACTTTTCTGACAAGCAGCCGGGCGGGCAGAG
TCACGCATGGTGTCGGACCAGGCTTCATTCCCCTCACAACACTCTTCCAATTTCTAACGTTGATGCCAAAA

dot-bracket secondary structure
..(((((((((...(((((...(((.(((((.(..(((((((((.((.(((((((..(((.(((.........(((((....((......))...)))))
........))).)))..))))))).)).)))))))))..)))))).))).)))))..))))))).))....


SIMILARITIES
miRBase pta-MIR166b: 1e-66

PMRD pta-miR166b: 1e-66

microPC miR166: 0.000009		UniProt no hits

RFAM mir-166: 0.000003		most similar mature miRNAs

Identical with: pta-MIR166b from miRBase (MNEST039421)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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