ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGCTCGACT mismatches: 3 bulges: 0 |
pre-miRNA
AGACCTCCATGTTGATTGAGGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCCCCA
ATCGGAGATCTTCCC
dot-bracket secondary structure
(((.((((.....(((((.((((((((..((((((.(((((..(((((((((((((...)))).)))))))))..))))).))))))..)))))))).))
))))))).)))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGACCTCCATGTTGATTGAGGGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCCCCCA
ATCGGAGATCTTCCC
dot-bracket secondary structure
(((.((((.....(((((.((((((((..((((((.(((((..(((((((((((((...)))).)))))))))..))))).))))))..)))))))).))
))))))).)))....
SIMILARITIES| miRBase pta-MIR166a: 2e-48 PMRD pta-miR166a: 2e-48 microPC miR166: 8e-39 | UniProt no hits RFAM mir-166: 0.0000001 | most similar mature miRNAs |
Identical with: pta-MIR166a from miRBase (MNEST039420) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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